Generates a block permutation distribution of \(V\) statistic. Precomputes distances and some indexing arrays to quickly generate samples from the block permutation distribution of the \(V\) statistic of \(\mathbf{X}\).

cacheBlockPermute2(X, block_boundaries, nruns, p = 2)

Arguments

X

The binary or real matrix on which to perform permutation resampling

block_boundaries

Vector denoting the positions where a new block of non-independent features starts

nruns

The resampling number (use at least 1000)

p

The power p of \(l_p^p\), i.e., \(||x||_p^p = (x_1^p+...x_n^p)\)

Value

A vector of resampled values of the \(V\) statistic

Details

This version is with block boundaries specified.

Dependencies: buildForward, buildReverse, cachePermute, getHammingDistance, getLpDistance